Fitpagel phytools
WebValue. An object of class "fitPagel" which contains the optimized matrices under an independence & a dependence model, log-likelihoods, a likelihood ratio, and a P-value … http://www.phytools.org/static.help/fitPagel.html
Fitpagel phytools
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WebThe public API is chainable and can be simplified as call arguments, the last chart can be also written: Webplot(net::HybridNetwork) Plot a network using R graphics. Optional arguments are listed below. lines forming the network: useedgelength = false: if true, the tree edges and major hybrid edges are drawn proportionally to their length.Minor hybrid edges are not, however.
WebThis function fit's Pagel's (1994) model for the correlated evolution of two binary characters. plot.fitPagel plots the fitted models using arrows. WebContribute to liamrevell/phytools development by creating an account on GitHub. export(add.arrow, add.color.bar, add.everywhere, add.random, add.simmap.legend)
WebIn phytools::fitPagel this is done using the argument dep.var which can be "xy" (i.e., interdependence, the default), "x" or "y". The "xy" interdependent model is the most parameter rich and includes the others as special cases, while both "x" and "y" have the independent model as a special case. http://www.phytools.org/Cordoba2024/ex/9/Pagel94-method.html
WebIn phytools: Phylogenetic Tools for Comparative Biology (and Other Things) Defines functions namesplit plot.fitPagel make.sym.Qmatrix.from.gfit print.fitPagel fitPagel …
WebGeneric anova method for "fitPagel" object class in #Rstats #phytools. 👉 http://blog.phytools.org/2024/08/anova-for-fitpagel-object-class-in.html… diatomaceous earth mosquito controlWebUse the phytools function fitPagel to fit Pagel's model for correlated binary-trait evolution on the tree. What do you find? Visualize the character data on the tree. What does this tell you about the basis for your result? Do you feel confident that x & y have evolved in an evolutionarily correlated manner? diatomaceous earth minerals mouthwashhttp://www.phytools.org/static.help/00Index.html citing class notes apahttp://www.phytools.org/Cordoba2024/ch/6/Pagel94-challenge.html diatomaceous earth on carpet roachesWebplot.fitPagel plots the fitted models using arrows. Value An object of class "fitPagel" which contains the optimized matrices under an independence & a dependence model, log-likelihoods, a likelihood ratio, and a P-value for the independence model based on a … citing citation bluebookhttp://blog.phytools.org/2024/08/anova-for-fitpagel-object-class-in.html diatomaceous earth on bean plantsWebIn phytools: Phylogenetic Tools for Comparative Biology (and Other Things) Defines functions namesplit plot.fitPagel make.sym.Qmatrix.from.gfit print.fitPagel fitPagel Documented in fitPagel plot.fitPagel diatomaceous earth mixed with water